RonDB, automatic thread configuration

May 24, 2021
in
Product Updates
by
Mikael Ronström
Edited: First published 

This blog introduces how RonDB handles automatic thread configuration. It is more technical and dives deeper under the surface of how RonDB operates. RonDB provides a configuration option, ThreadConfig, whereby the user can have full control over the assignment of threads to CPUs, how the CPU locking is to be performed and how the thread should be scheduled.

However, for the absolute majority of users this is too advanced, thus the managed version of RonDB ensures that this thread configuration is based on best practices found over decades of testing. This means that every user of the managed version of RonDB will get access to a thread configuration that is optimised for their particular VM size.

In addition RonDB makes use of adaptive CPU spinning in a way that limits the power usage, but still provides very low latency in all database operations. Adaptive CPU spinning improves latency by up to 50% and in most cases more than 10% improvement.

RonDB 21.04 uses automatic thread configuration by default. This means that as a user you don’t have to care about the configuration of threads. What RonDB does is that it retrieves the number of CPUs available to the RonDB data node process. In the managed version of RonDB, this is the full VM or bare metal server available to the data node. In the open source version of RonDB, one can also limit the amount of CPUs available to RonDB data nodes process by using taskset or numactl when starting the data node. RonDB retrieves information about CPU cores, CPU sockets, and connections to the L3 caches of the CPUs. All of this information is used to set up the optimal thread configuration.

Thread types in RonDB


LDM threads house the data, query threads handle read committed queries, tc threads handle transaction coordination, receive threads handle incoming network messages, send thread handle the sending of network messages, and main threads handle metadata operations, asynchronous replication and a number of other things.

LDM threads

LDM thread is a key thread type. The LDM thread is responsible for reading and writing data. It manages the hash indexes, the ordered indexes, the actual data, and a set of triggers performing actions for indexes, foreign keys, full replication, asynchronous replication. This thread type is where most of the CPU processing is done. RonDB has an extremely high number of instructions per cycle compared to any other DBMS engine. The LDM thread often executes 1.25 instructions per cycle where many other DBMS engines have reported numbers around 0.25 instructions per cycle. This is a key reason why RonDB has such a great performance both in terms of throughput and latency. This is the result of the design of data structures in RonDB that are CPU cache aware and also due to the functional separation of thread types.

Query threads

Query thread is a new addition that was introduced in NDB Cluster 8.0.23. In NDB this is not used by default, RonDB enables the use of query threads by default in the automatic thread configuration. The query threads run the same code as the LDM threads and handles a subset of the operations that the LDM can handle. A normal SELECT query will use read committed queries that can be executed by the query threads. A table partition (sometimes referred to as a table fragment or shard) belongs to a certain LDM thread, thus only this LDM thread can be used for writes and locked reads on rows in this table partition. However for read committed queries, the query threads can be used.

To achieve the best performance RonDB uses CPU locking. In Linux, it is quite common that a thread migrates from one CPU to another CPU. If the thread migrates to a CPU belonging to a different CPU core, the thread will suffer a lot of CPU cache misses immediately after being migrated. To avoid this, RonDB locks threads to specific CPU cores. Thus, it is possible to migrate the thread, but only to another CPU in a CPU core that shares the same CPU caches.

Query threads and LDM threads are organised into Round Robin groups. Each Round Robin group consists of between 4 and 8 LDM threads and the same amount of query threads. All threads within one Round Robin group share the same CPU L3 cache. This ensures that we retain the CPU efficiency even with the introduction of these new query threads. This is important since query threads introduce new mutexes and the performance of these are greatly improved when threads sharing mutexes also share CPU caches. The query thread chosen to execute a query must be in the same Round Robin group as the data owning LDM thread is.

Query threads make it possible to decrease the amount of partitions in a table. As an example, we are able to process more than 3 times as many transactions per second using a single partition in Sysbench OLTP RW compared to when we only use LDM threads. Most key-value stores have data divided into table partitions for the primary key of the table. Many key-value stores also contain additional indexes on columns that are not used for partitioning. Since the table is partitioned, this means that each table partition will contain each of those additional indexes. When performing a range scan on such an index, each table partition must be scanned. Thus the cost of performing range scans increases as the number of table partitions increases. RonDB can scale the reads in a single partition to many query threads, this makes it possible to decrease the number of table partitions in RonDB. In Sysbench OLTP RW this improves performance by around 20% even in a fairly small 2-node setup of RonDB.

In addition query threads ensure that hotspots in the tables can be handled by many threads, thus avoiding the need to partition even more to handle hotspots.

At the same time a modest amount of table partitions increases the amount of writes that we can perform on a table and it makes it possible to parallelise range scans which will speed up complex query execution significantly. Thus in RonDB we have attempted to find a balance between overhead and improved parallelism and improved write scalability.

The cost of key lookups is not greatly affected by the number of partitions since those use a hash lookup and thus always go directly to the thread that can execute the key lookup.

RonDB locks LDM threads and query threads in pairs. There is one LDM thread and one query thread in each such LDM group, we attempt to lock this LDM Group to one CPU core. LDM Groups are organised into Round Robin Groups.

A common choice for a scheduling algorithm in an architecture like this would be to use a simple round robin scheduler. However such an algorithm is too simple for this model. We have two problems to overcome. The first is that the load on LDM threads is not balanced since we have decreased the number of table partitions in a table. Second writes and locked reads can only be scheduled in an LDM thread. Thus it is important to use the Read Committed queries to achieve a balanced load. Since LDM threads and query threads are locked onto the same CPU core it is ok for an LDM thread to be almost idle and we will still be efficient since the query thread on this CPU core will be very efficient.


When a query can be scheduled to both an LDM thread and the query threads in the same Round Robin group the following two-level scheduling algorithm is used.

We gather statistics about CPU usage of threads and we also gather queue lengths in the scheduling queues. Based on this information we prioritise selecting the LDM thread and the query thread in the same LDM group. However, if required to achieve a balanced use of the CPU resources in the Round Robin group we will also schedule read committed queries to any query thread in the Round Robin group of the LDM thread. The gathered CPU usage information affects the load balancer with a delay of around 100 milliseconds. The queue length information makes it possible to adapt to changing load in less than a millisecond.

Given that we use less table partitions in RonDB compared to other solutions, there is a risk of imbalanced load on the CPUs. This problem is solved by two things. First, we use a two-level load balancer on LDM and Query threads. This ensures that we will move away work from overloaded LDM threads towards unused query threads. Second, since the LDM and Query threads share the same CPU core we will have access to an unused CPU core in query threads that execute on the same CPU core as an LDM thread that is currently underutilized. Thus, we expect that this architecture will achieve a balanced load on the CPU cores in the data node architecture.

LDM and query threads use around 50-60% of the available CPU resources in a data node.

tc threads

The tc threads receive all database operations sent from the NDB API. They take care of coordinating transactions and decide which node should take care of the queries. They use around 20-25% of the CPU resources. The NDB API selects tc threads in a node using a simple round robin scheme.

receive threads

The receive threads take care of a subset of the communication links. Thus, the receive thread load is usually fairly balanced but can be a bit more unbalanced if certain API nodes are more used in querying RonDB. The communication links between data nodes in the same node group are heavily used when performing updates. To ensure that RonDB can scale in this situation these node links use multiple communication links. Receive threads use around 10-15% of the CPU resources.

send threads

The send threads assist in sending networking messages to other nodes. The sending of messages can be done by any thread and there is an adaptive algorithm that assigns more load for sending to threads that are not so busy. The send threads assists in sending to ensure that we have enough capacity to handle all the load. It is not necessary to have send threads, the threads can handle sending even without a send thread. Send threads use around 0-10% of the CPUs available.

The total cost of sending can be quite substantial in a distributed database engine, thus the adaptive algorithm is important to balance out this load on the various threads in the data node.

main threads

The number of main threads supported can be 0, 1 or 2. These threads handle a lot of the interactions around creating tables, indexes and any other metadata operation. They also handle a lot of the code around recovery and heartbeats. They are handling any subscriptions to asynchronous replication events used by replication channels to other RonDB clusters.

Analysis of the RonDB thread model

Background

RonDB is based on NDB Cluster. NDB was focused on being a high-availability key-value store from its origin in database research in the 1990s. The thread model in NDB is inherited from a telecom system developed in Ericsson called AXE. Interestingly in one of my first jobs at Philips I worked on a banking system developed in the 1970s, this system had a very similar model compared to the original thread model in NDB and in AXE. In the operating system development time-sharing has been the dominant model since a long time back. However the model used in NDB where the execution thread is programmed as an asynchronous engine where the application handles a state machine has a huge performance advantage when handling many very small tasks. A normal task in RonDB is a key lookup, or a small range scan. Each of those small tasks is actually divided even further when performing updates and parallel range scans. This means that the length of a task in RonDB is on the order of 500 ns up to around 10 microseconds.

Traditional thread design for key-value stores

Time-sharing operating systems are not designed to handle context switches of this magnitude. NDB was designed with this understanding from the very beginning. Early competitors of NDB used normal operating system threads for each transaction and even in a real-time operating system this had no chance to compete with the effectiveness of NDB. None of these competitors are still around competing in the key-value store market.

Asynchronous thread model

The first thread model in NDB used a single thread to handle everything, send, receive, database handling and transaction handling. This is version 1 of the thread architecture, that is also implemented in the open source version of Redis. With the development of multi-core CPUs it became obvious that more threads were needed. What NDB did here was introduce both a functional separation of threads and partitioning the data to achieve a more multi-threaded execution environment. This is version 2 of the thread architecture.

Modern competitors of RonDB have now understood the need to use asynchronous programming to achieve the required performance in a key-value store. We see this in AeroSpike, Redis, ScyllaDB and many other key-value stores. Thus the industry has followed the RonDB road to achieving an efficient key-value store implementation.

Functional separation of threads

Most competitors have opted for only partitioning the data and thus each thread still has to execute all the code for meta data handling, replication handling, send, receive and database operations. Thus RonDB has actually advanced version 2 of the thread architecture further than its competitors.

One might ask, what difference does this make?

All modern CPUs use both a data cache and an instruction cache. By combining all functions inside one thread, the instruction cache will have to execute more code. In RonDB the LDM thread only executes the operation to change the data structures, the tc thread only executes code to handle transactions and the receive thread can focus on the code to execute network receive operations. This makes each thread more efficient. The same is true for the CPU data cache, the LDM thread need not bother with the data structures used for transaction handling and network receive. It can focus the CPU caches on the requirements for database operations which is challenging enough in a database engine.

A scalable key-value store design

A simple splitting of data into different table partitions makes sense if all operations towards the key-value store are primary key lookups or unique key lookups. However most key-value stores also require performing general search operations as part of the application. These search operations are implemented as range scans with search conditions, these scale not so well with a simple splitting of data.

To handle this, RonDB introduces version 3 of the thread architecture that uses a compromise where we still split the data, but we introduce query threads to assist the LDM threads in reading the data. Thus RonDB can handle hotspots of data and require fewer number of table partitions to achieve the required scalability of the key-value store.

Thoughts on a v4 of the thread architecture have already emerged, so expect this development to continue for a while more. This includes even better handling of the higher latency to persistent memory data structures.

Finally, even if a competitor managed to replicate all of those features of RonDB, RonDB has another ace in the 3-level distributed hashing algorithm that makes use of a CPU cache aware data structure.

Conclusion

All of those things combined makes us comfortable that RonDB will continue to lead the key-value store market in terms of LATS: lowest Latency, highest Availability, the highest Throughput and the most Scalable data storage. Thus, being the best LATS database in the industry.

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